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LOC113313363 DNA ligase 1-like [ Papaver somniferum (opium poppy) ]

Gene ID: 113313363, updated on 9-Nov-2023

Summary

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Gene symbol
LOC113313363
Gene description
DNA ligase 1-like
Locus tag
C5167_001191
Gene type
protein coding
RefSeq status
MODEL
Organism
Papaver somniferum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Ranunculales; Papaveraceae; Papaveroideae; Papaver
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Genomic context

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Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM357369v1 (GCF_003573695.1) 9 NC_039366.1 (56508658..56514843, complement)

Chromosome 9 - NC_039366.1Genomic Context describing neighboring genes Neighboring gene SHUGOSHIN 2-like Neighboring gene uncharacterized LOC113309415 Neighboring gene uncharacterized LOC113309340 Neighboring gene uncharacterized LOC113311977

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039366.1 Chromosome 9 Reference ASM357369v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papaver somniferum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357369v1 Primary Assembly

Genomic

  1. NC_039366.1 Reference ASM357369v1 Primary Assembly

    Range
    56508658..56514843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026562125.1 → XP_026417910.1  DNA ligase 1-like

    UniProtKB/TrEMBL
    A0A4Y7KET8, A0A4Y7KY75
    Conserved Domains (1) summary
    PLN03113
    Location:130 → 771
    PLN03113; DNA ligase 1; Provisional
Nucleotide Protein
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