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apex1 APEX nuclease (multifunctional DNA repair enzyme) 1 [ Mastacembelus armatus (zig-zag eel) ]

Gene ID: 113142191, updated on 15-Mar-2024

Summary

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Gene symbol
apex1
Gene description
APEX nuclease (multifunctional DNA repair enzyme) 1
See related
Ensembl:ENSMAMG00000025566
Gene type
protein coding
RefSeq status
MODEL
Organism
Mastacembelus armatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
101 current fMasArm1.2 (GCF_900324485.2) 23 NC_046655.1 (3976881..3980178)
100 previous assembly fMasArm1.1 (GCF_900324485.1) Unplaced Scaffold NW_020535940.1 (3976881..3980178)

Chromosome 23 - NC_046655.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 2 homolog Neighboring gene uncharacterized LOC113142265 Neighboring gene O-sialoglycoprotein endopeptidase Neighboring gene zinc finger protein 11-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA 3'-5' DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-(apurinic or apyrimidinic site) lyase
Names
apurinic/apyrimidinic endodeoxyribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mastacembelus armatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fMasArm1.2 Primary Assembly

Genomic

  1. NC_046655.1 Reference fMasArm1.2 Primary Assembly

    Range
    3976881..3980178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026327077.1 → XP_026182862.1  DNA-(apurinic or apyrimidinic site) lyase isoform X2

    UniProtKB/TrEMBL
    A0A7N8Y9I5
    Related
    ENSMAMP00000062354.1, ENSMAMT00000037929.1
    Conserved Domains (1) summary
    cd09087
    Location:55 → 308
    Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases

  2. XM_026327076.2 → XP_026182861.1  DNA-(apurinic or apyrimidinic site) lyase isoform X1

    UniProtKB/TrEMBL
    A0A7N8XRT2, A0A7N8Y9I5
    Related
    ENSMAMP00000054899.1, ENSMAMT00000067401.1
    Conserved Domains (1) summary
    cd09087
    Location:88 → 341
    Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases
Nucleotide Protein
Heading Accession and Version

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