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ptbp2a polypyrimidine tract binding protein 2a [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113028780, updated on 15-Mar-2024

Summary

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Gene symbol
ptbp2a
Gene description
polypyrimidine tract binding protein 2a
See related
Ensembl:ENSACLG00000005493
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
zebrafish all
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Genomic context

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See ptbp2a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 9 NC_039310.1 (3271989..3312570, complement)

Chromosome 9 - NC_039310.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113029714 Neighboring gene uncharacterized LOC113029713 Neighboring gene uncharacterized LOC113029739 Neighboring gene cytochrome c-type heme lyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039310.1 Chromosome 9 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039310.1 Reference fAstCal1.2 Primary Assembly

    Range
    3271989..3312570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026179225.1 → XP_026035010.1  polypyrimidine tract-binding protein 2-like isoform X4

    UniProtKB/TrEMBL
    A0A3P8NTN8
    Related
    ENSACLP00000008128.1, ENSACLT00000008315.1
    Conserved Domains (1) summary
    TIGR01649
    Location:32 → 496
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_026179224.1 → XP_026035009.1  polypyrimidine tract-binding protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A3P8NTM3
    Conserved Domains (1) summary
    TIGR01649
    Location:63 → 527
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_026179223.1 → XP_026035008.1  polypyrimidine tract-binding protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A3P8NTN8
    Conserved Domains (1) summary
    TIGR01649
    Location:77 → 537
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_026179222.1 → XP_026035007.1  polypyrimidine tract-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A3P8NTM3
    Related
    ENSACLP00000008104.1, ENSACLT00000008290.1
    Conserved Domains (1) summary
    TIGR01649
    Location:77 → 541
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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