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SMNDC1 survival motor neuron domain containing 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112672318, updated on 15-Mar-2024

Summary

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Gene symbol
SMNDC1
Gene description
survival motor neuron domain containing 1
See related
Ensembl:ENSCAFG00020011913
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SMNDC1 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) 28 NC_064270.1 (21840928..21852700, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 28 Unlocalized Scaffold NW_023365220.1 (22216978..22229021, complement)

Chromosome 28 - NC_064270.1Genomic Context describing neighboring genes Neighboring gene adducin 3 Neighboring gene MAX interactor 1, dimerization protein Neighboring gene uncharacterized LOC112672321 Neighboring gene protein FAM136A-like Neighboring gene uncharacterized LOC112672322 Neighboring gene uncharacterized LOC118352675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064270.1 Reference ASM325472v2

    Range
    21840928..21852700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025467171.3 → XP_025322956.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KH53
    Related
    ENSCAFP00020014761.1
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  2. XM_025467170.3 → XP_025322955.1  survival of motor neuron-related-splicing factor 30 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NWE7, A0A8I3QP62
    Conserved Domains (1) summary
    cd20399
    Location:76 → 131
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  3. XM_035707907.2 → XP_035563800.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KH53
    Conserved Domains (1) summary
    cd20399
    Location:73 → 128
    Tudor_SPF30; Tudor domain found in survival of motor neuron-related-splicing factor 30 (SPF30) and similar proteins

  4. XM_049103612.1 → XP_048959569.1  survival of motor neuron-related-splicing factor 30 isoform X3

Nucleotide Protein
Heading Accession and Version

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