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SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [ Canis lupus dingo (dingo) ]

Gene ID: 112649146, updated on 3-Apr-2024

Summary

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Gene symbol
SMARCA1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
See related
Ensembl:ENSCAFG00020001751
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus dingo (sub-species: dingo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
25
Annotation release Status Assembly Chr Location
102 current ASM325472v2 (GCF_003254725.2) X NC_064281.1 (101138801..101211855, complement)
101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) X Unlocalized Scaffold NW_023365275.1 (101555067..101628239, complement)

Chromosome X - NC_064281.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118353676 Neighboring gene OCRL inositol polyphosphate-5-phosphatase Neighboring gene apelin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable global transcription activator SNF2L1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM325472v2

Genomic

  1. NC_064281.1 Reference ASM325472v2

    Range
    101138801..101211855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025431194.3 → XP_025286979.1  probable global transcription activator SNF2L1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0JKA5, A0A8C0T9Q9
    Related
    ENSCAFP00020002022.1
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1057
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  2. XM_049107788.1 → XP_048963745.1  probable global transcription activator SNF2L1 isoform X5

    UniProtKB/TrEMBL
    A0A8P0SYE8

  3. XM_025431193.3 → XP_025286978.1  probable global transcription activator SNF2L1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T9Q9
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1069
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  4. XM_025431198.3 → XP_025286983.1  probable global transcription activator SNF2L1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0RHS6, A0A8C0T9Q9, A0A8I3Q5W2
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1046
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  5. XM_025431197.3 → XP_025286982.1  probable global transcription activator SNF2L1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RHS6, A0A8C0TDZ4, A0A8I3Q5W2, A0A8P0TAD6
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1046
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  6. XM_025431195.2 → XP_025286980.1  probable global transcription activator SNF2L1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0RHS6, A0A8C0TDZ4, A0A8I3Q5W2, A0A8P0TAD6
    Conserved Domains (1) summary
    PLN03142
    Location:87 → 1046
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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