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LOC112256219 forkhead box protein O4 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112256219, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112256219
Gene description
forkhead box protein O4
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112256219 in Genome Data Viewer
Location:
chromosome: LG08
Exon count:
3
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG08 NC_056436.1 (59838058..59846853, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 8 NC_037104.1 (20847048..20855771)

Linkage Group LG08 - NC_056436.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG13 homolog Neighboring gene sestrin-3 Neighboring gene sorting nexin-12 Neighboring gene cationic amino acid transporter 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein O4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056436.1 Reference Otsh_v2.0 Primary Assembly

    Range
    59838058..59846853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024429306.2 → XP_024285074.1  forkhead box protein O4

    UniProtKB/TrEMBL
    A0A8C8FMP7
    Conserved Domains (3) summary
    cd00059
    Location:94 → 174
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16675
    Location:400 → 444
    FOXO_KIX_bdg; KIX-binding domain of forkhead box O, CR2
    pfam16676
    Location:560 → 598
    FOXO-TAD; Transactivation domain of FOXO protein family
Nucleotide Protein
Heading Accession and Version

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