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LOC112242285 transcription factor Dp-1 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112242285, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112242285
Gene description
transcription factor Dp-1
See related
EnsemblRapid:ENSOTSG00005011561
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG03
Exon count:
12
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG03 NC_056431.1 (68853393..68869294, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 3 NC_037099.1 (71767749..71785146, complement)

Linkage Group LG03 - NC_056431.1Genomic Context describing neighboring genes Neighboring gene protein-lysine methyltransferase METTL21C-like Neighboring gene G protein-coupled receptor kinase 1 a Neighboring gene DCN1-like protein 2 Neighboring gene growth hormone-regulated TBC protein 1-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Dp-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056431.1 Reference Otsh_v2.0 Primary Assembly

    Range
    68853393..68869294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042319892.1 → XP_042175826.1  transcription factor Dp-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C8ET69, A0A8C8JZQ4
    Related
    ENSOTSP00005024478.2, ENSOTST00005026472.2
    Conserved Domains (3) summary
    cd14458
    Location:210 → 256
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:127 → 205
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:212 → 350
    DP; Transcription factor DP

  2. XM_024410251.2 → XP_024266019.1  transcription factor Dp-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C8ET43, A0A8C8JZQ4
    Conserved Domains (3) summary
    cd14458
    Location:198 → 244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:115 → 193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200 → 338
    DP; Transcription factor DP

  3. XM_024410245.2 → XP_024266013.1  transcription factor Dp-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C8JZQ4
    Related
    ENSOTSP00005024477.2, ENSOTST00005026471.2
    Conserved Domains (3) summary
    cd14458
    Location:206 → 252
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:123 → 201
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:208 → 346
    DP; Transcription factor DP

  4. XM_024410257.2 → XP_024266025.1  transcription factor Dp-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C8ET43, A0A8C8JZQ4
    Related
    ENSOTSP00005024472.2, ENSOTST00005026466.2
    Conserved Domains (3) summary
    cd14458
    Location:198 → 244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:115 → 193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200 → 338
    DP; Transcription factor DP
Nucleotide Protein
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