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LOC112238812 transforming growth factor beta-3 proprotein [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112238812, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112238812
Gene description
transforming growth factor beta-3 proprotein
See related
Ensembl:ENSOTSG00005038626
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG05
Exon count:
8
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG05 NC_056433.1 (5854797..5883362, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020129714.1 (40186..63840)

Linkage Group LG05 - NC_056433.1Genomic Context describing neighboring genes Neighboring gene basic leucine zipper transcriptional factor ATF-like Neighboring gene feline leukemia virus subgroup C receptor-related protein 2 Neighboring gene steroid hormone receptor ERR2-like Neighboring gene YLP motif-containing protein 1-like Neighboring gene uncharacterized LOC121846468

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type II transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables type III transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transforming growth factor beta-3 proprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056433.1 Reference Otsh_v2.0 Primary Assembly

    Range
    5854797..5883362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042321392.1 → XP_042177326.1  transforming growth factor beta-3 proprotein isoform X2

    UniProtKB/TrEMBL
    A0A8C8IPW3
    Related
    ENSOTSP00005082131.2, ENSOTST00005088975.2
    Conserved Domains (2) summary
    cd19386
    Location:308 → 408
    TGF_beta_TGFB3; transforming growth factor beta (TGF-beta) like domain found in transforming growth factor beta-3 (TGF-beta-3) and similar proteins
    pfam00688
    Location:23 → 228
    TGFb_propeptide; TGF-beta propeptide

  2. XM_042321391.1 → XP_042177325.1  transforming growth factor beta-3 proprotein isoform X1

    UniProtKB/TrEMBL
    A0A8C8IPW3
    Related
    ENSOTSP00005129792.1, ENSOTST00005139866.1
    Conserved Domains (2) summary
    cd19386
    Location:316 → 416
    TGF_beta_TGFB3; transforming growth factor beta (TGF-beta) like domain found in transforming growth factor beta-3 (TGF-beta-3) and similar proteins
    pfam00688
    Location:23 → 236
    TGFb_propeptide; TGF-beta propeptide
Nucleotide Protein
Heading Accession and Version

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