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LOC112214213 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112214213, updated on 7-Dec-2023

Summary

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Gene symbol
LOC112214213
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: LG15
Exon count:
11
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG15 NC_056443.1 (5995374..6015964, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 15 NC_037111.1 (4563722..4589268, complement)

Linkage Group LG15 - NC_056443.1Genomic Context describing neighboring genes Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene dual specificity tyrosine-phosphorylation-regulated kinase 4 Neighboring gene RAD51-associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056443.1 Reference Otsh_v2.0 Primary Assembly

    Range
    5995374..6015964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042298002.1 → XP_042153936.1  probable polypeptide N-acetylgalactosaminyltransferase 8

    UniProtKB/TrEMBL
    A0A8C8CPE0
    Conserved Domains (2) summary
    cd02510
    Location:161 → 462
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:475 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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