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LOC112160041 splicing factor U2AF 35 kDa subunit [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112160041, updated on 14-Dec-2023

Summary

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Gene symbol
LOC112160041
Gene description
splicing factor U2AF 35 kDa subunit
See related
Ensembl:ENSOMEG00000009326
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: LG2
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG2 NC_050513.1 (1235635..1243975, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096097.1 (1235635..1243976, complement)

Linkage Group LG2 - NC_050513.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112160066 Neighboring gene uncharacterized LOC118599445 Neighboring gene cystathionine beta-synthase a Neighboring gene B- and T-lymphocyte attenuator-like Neighboring gene uncharacterized LOC112160135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2AF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor U2AF 35 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050513.1 Reference ASM292280v2 Primary Assembly

    Range
    1235635..1243975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024294366.2 → XP_024150134.1  splicing factor U2AF 35 kDa subunit isoform X2

    Conserved Domains (2) summary
    cd12538
    Location:43 → 145
    RRM_U2AF35; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
    pfam00642
    Location:148 → 174
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_024294365.2 → XP_024150133.1  splicing factor U2AF 35 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A3B3BS78
    Related
    ENSOMEP00000008174.1
    Conserved Domains (2) summary
    pfam00642
    Location:149 → 175
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    cd12538
    Location:43 → 146
    RRM_U2AF35; RNA recognition motif (RRM) found in U2 small nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa subunit (U2AF35)
Nucleotide Protein Strain
Heading Accession and Version

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