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srsf3b serine and arginine rich splicing factor 3b [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112144586, updated on 15-Mar-2024

Summary

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Gene symbol
srsf3b
Gene description
serine and arginine rich splicing factor 3b
See related
Ensembl:ENSOMEG00000014893
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
srsf3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
7
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (31066917..31071080, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (473873..478036, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 2 Neighboring gene cyclin-dependent kinase inhibitor 1A Neighboring gene S-adenosylhomocysteine hydrolase-like protein 1 Neighboring gene striatin interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 3b
Names
serine and arginine rich splicing factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    31066917..31071080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024269175.1 → XP_024124943.1  serine/arginine-rich splicing factor 3b

    UniProtKB/TrEMBL
    A0A3B3DKB7
    Related
    ENSOMEP00000030563.1, ENSOMET00000033142.1
    Conserved Domains (1) summary
    cl17169
    Location:5 → 85
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_024269174.2 → XP_024124942.1  serine/arginine-rich splicing factor 3b

    UniProtKB/TrEMBL
    A0A3B3DKB7
    Conserved Domains (1) summary
    cl17169
    Location:5 → 85
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein Strain
Heading Accession and Version

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