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ar androgen receptor [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112139901, updated on 14-Dec-2023

Summary

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Gene symbol
ar
Gene description
androgen receptor
See related
Ensembl:ENSOMEG00000005697
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: LG14
Exon count:
8
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG14 NC_050525.1 (11378537..11409728)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096077.1 (7945942..7980936)

Linkage Group LG14 - NC_050525.1Genomic Context describing neighboring genes Neighboring gene N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3-like Neighboring gene N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 Neighboring gene oligophrenin-1 Neighboring gene gap junction protein beta 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in androgen receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in male gonad development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
androgen receptor
Names
androgen receptor beta subtype

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050525.1 Reference ASM292280v2 Primary Assembly

    Range
    11378537..11409728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024262753.2 → XP_024118521.1  androgen receptor isoform X1

    UniProtKB/TrEMBL
    A0A3B3BGT1, A0A834CGP9
    Related
    ENSOMEP00000004685.1
    Conserved Domains (3) summary
    cd07173
    Location:357 → 438
    NR_DBD_AR; DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers
    pfam02166
    Location:55 → 155
    Androgen_recep; Androgen receptor
    cl11397
    Location:473 → 717
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_024262760.1 → XP_024118528.1  androgen receptor isoform X2

    UniProtKB/TrEMBL
    A0A834CGP9
    Conserved Domains (3) summary
    cd07173
    Location:356 → 437
    NR_DBD_AR; DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers
    pfam02166
    Location:55 → 155
    Androgen_recep; Androgen receptor
    cl11397
    Location:472 → 716
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein Strain
Heading Accession and Version

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