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LOC111573261 actin alpha cardiac muscle 1 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111573261, updated on 16-Nov-2023

Summary

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Gene symbol
LOC111573261
Gene description
actin alpha cardiac muscle 1
See related
EnsemblRapid:ENSAOCG00000034232
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Also known as
actc1
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 20 NC_072785.1 (10739733..10743567, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372735.1 (580937..584728, complement)

Chromosome 20 - NC_072785.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129347789 Neighboring gene gap junction protein delta 2b Neighboring gene aquarius intron-binding spliceosomal factor Neighboring gene zinc finger protein 770

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables myosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin-myosin filament sliding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcomere IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin, alpha cardiac muscle 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072785.1 Reference ASM2253959v1 Primary Assembly

    Range
    10739733..10743567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023277331.3 → XP_023133099.1  actin, alpha cardiac muscle 1

    UniProtKB/TrEMBL
    A0A3Q1BB14, A0A3Q1CP14
    Related
    ENSAOCP00000007015.2, ENSAOCT00000003583.2
    Conserved Domains (1) summary
    PTZ00281
    Location:4 → 377
    PTZ00281; actin; Provisional
Nucleotide Protein
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