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ercc4 excision repair cross-complementation group 4 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111567027, updated on 18-Jun-2024

Summary

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Gene symbol
ercc4
Gene description
excision repair cross-complementation group 4
See related
Ensembl:ENSAOCG00000011827
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 18 NC_072783.1 (22722856..22732627, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019371868.1 (325861..335773)

Chromosome 18 - NC_072783.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129347427 Neighboring gene myocardin related transcription factor Ba Neighboring gene calcineurin-like phosphoesterase domain containing 1 Neighboring gene uncharacterized LOC118470130 Neighboring gene shisa family member 9a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair endonuclease XPF
Names
ERCC excision repair 4, endonuclease catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072783.1 Reference ASM2253959v1 Primary Assembly

    Range
    22722856..22732627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023267872.3 → XP_023123640.2  DNA repair endonuclease XPF isoform X2

    UniProtKB/TrEMBL
    A0A3Q1B5D1

  2. XM_023267871.3 → XP_023123639.2  DNA repair endonuclease XPF isoform X1

    UniProtKB/TrEMBL
    A0A3Q1B5D1
    Related
    ENSAOCP00000054349.1, ENSAOCT00000083806.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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