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LOC111560441 HLA class II histocompatibility antigen, DO beta chain-like [ Felis catus (domestic cat) ]

Gene ID: 111560441, updated on 16-Nov-2023

Summary

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Gene symbol
LOC111560441
Gene description
HLA class II histocompatibility antigen, DO beta chain-like
See related
EnsemblRapid:ENSFCTG00005026235
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
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Genomic context

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Location:
chromosome: B2
Exon count:
7
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B2 NC_058372.1 (31712841..31722688, complement)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) B2 NC_018727.3 (34541897..34547790, complement)

Chromosome B2 - NC_058372.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene DLA class II histocompatibility antigen, DR-1 beta chain Neighboring gene uncharacterized LOC123385338 Neighboring gene transporter 2, ATP binding cassette subfamily B member Neighboring gene proteasome 20S subunit beta 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DO beta chain-like
Names
HLA class II histocompatibility antigen, DO beta chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058372.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    31712841..31722688 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045057369.1 → XP_044913304.1  HLA class II histocompatibility antigen, DO beta chain-like isoform X3

    UniProtKB/TrEMBL
    A0A5F5XMF3
    Conserved Domains (2) summary
    smart00921
    Location:51 → 122
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    smart00407
    Location:132 → 195
    IGc1; Immunoglobulin C-Type

  2. XM_045057366.1 → XP_044913301.1  HLA class II histocompatibility antigen, DO beta chain-like isoform X1

    UniProtKB/TrEMBL
    A0A5F5XMF3
    Conserved Domains (2) summary
    smart00921
    Location:51 → 122
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    smart00407
    Location:154 → 225
    IGc1; Immunoglobulin C-Type

  3. XM_045057368.1 → XP_044913303.1  HLA class II histocompatibility antigen, DO beta chain-like isoform X2

    UniProtKB/TrEMBL
    A0A5F5XMF3
    Conserved Domains (2) summary
    smart00921
    Location:51 → 122
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    smart00407
    Location:150 → 221
    IGc1; Immunoglobulin C-Type

  4. XM_023253804.2 → XP_023109572.1  HLA class II histocompatibility antigen, DO beta chain-like isoform X4

    UniProtKB/TrEMBL
    A0A5F5XMF3
    Conserved Domains (2) summary
    pfam00969
    Location:51 → 125
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    cl11960
    Location:139 → 232
    Ig; Immunoglobulin domain

  5. XM_023253805.2 → XP_023109573.1  HLA class II histocompatibility antigen, DO beta chain-like isoform X5

    UniProtKB/TrEMBL
    A0A5F5XMF3, M3WK10
    Related
    ENSFCTP00005052438.1, ENSFCTT00005074344.1
    Conserved Domains (2) summary
    pfam00969
    Location:51 → 125
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    cl11960
    Location:135 → 228
    Ig; Immunoglobulin domain
Nucleotide Protein
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