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HHLA3 HERV-H LTR-associating 3 [ Homo sapiens (human) ]

Gene ID: 11147, updated on 19-Jul-2022

Summary

Official Symbol
HHLA3provided by HGNC
Official Full Name
HERV-H LTR-associating 3provided by HGNC
Primary source
HGNC:HGNC:4906
See related
Ensembl:ENSG00000197568 MIM:604372; AllianceGenome:HGNC:4906
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 3.4), kidney (RPKM 3.3) and 25 other tissues See more
Orthologs
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Genomic context

See HHLA3 in Genome Data Viewer
Location:
1p31.1
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (70354811..70368023)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (70233320..70246532)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (70820494..70833706)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 11 Neighboring gene ankyrin repeat domain 13C Neighboring gene HHLA3 antisense RNA 1 Neighboring gene cystathionine gamma-lyase Neighboring gene uncharacterized LOC105378793

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Other Names

  • HERV-H LTR-associating protein 3
  • human endogenous retrovirus-H long terminal repeat-associating 3
  • human endogenous retrovirus-H long terminal repeat-associating protein 3

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027404.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AF126164, BI868263, BQ009559
    Related
    ENST00000463058.7
  2. NR_168346.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
    Related
    ENST00000370940.8
  3. NR_168347.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
    Related
    ENST00000359875.10
  4. NR_168348.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
    Related
    ENST00000361764.9
  5. NR_168349.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
    Related
    ENST00000486110.2
  6. NR_168350.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
  7. NR_168351.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839
    Related
    ENST00000689607.2
  8. NR_168352.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158839

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    70354811..70368023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    70233320..70246532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001031693.3: Suppressed sequence

    Description
    NM_001031693.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001036645.2: Suppressed sequence

    Description
    NM_001036645.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001036646.2: Suppressed sequence

    Description
    NM_001036646.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_007071.2: Suppressed sequence

    Description
    NM_007071.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.