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ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma [ Seriola dumerili (greater amberjack) ]

Gene ID: 111236982, updated on 12-Sep-2024

Summary

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Gene symbol
ikbkg
Gene description
inhibitor of nuclear factor kappa B kinase regulatory subunit gamma
See related
Ensembl:ENSSDUG00000014012
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175055.1 (257975..269767, complement)

NW_019175055.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 4 subunit beta 1 Neighboring gene selenophosphate synthetase 3 Neighboring gene transmembrane p24 trafficking protein 4 Neighboring gene pyridoxal phosphate binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175055 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of IkappaB kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NF-kappa-B essential modulator
Names
inhibitor of nuclear factor kappa B kinase subunit gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175055.1 Reference Sdu_1.0 Primary Assembly

    Range
    257975..269767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022765911.1 → XP_022621632.1  NF-kappa-B essential modulator isoform X4

    UniProtKB/TrEMBL
    A0A3B4ULM1
    Related
    ENSSDUP00000019238.1, ENSSDUT00000019583.1
    Conserved Domains (3) summary
    cd09803
    Location:409 → 494
    UBAN; polyubiquitin binding domain of NEMO and related proteins
    pfam11577
    Location:46 → 113
    NEMO; NF-kappa-B essential modulator NEMO
    cl25732
    Location:193 → 509
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_022765910.1 → XP_022621631.1  NF-kappa-B essential modulator isoform X3

    UniProtKB/TrEMBL
    A0A3B4ULM1
    Conserved Domains (3) summary
    cd09803
    Location:425 → 510
    UBAN; polyubiquitin binding domain of NEMO and related proteins
    pfam11577
    Location:46 → 113
    NEMO; NF-kappa-B essential modulator NEMO
    cl25732
    Location:193 → 525
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_022765909.1 → XP_022621630.1  NF-kappa-B essential modulator isoform X2

    UniProtKB/TrEMBL
    A0A3B4ULM1
    Conserved Domains (4) summary
    cd09803
    Location:443 → 528
    UBAN; polyubiquitin binding domain of NEMO and related proteins
    pfam11577
    Location:46 → 113
    NEMO; NF-kappa-B essential modulator NEMO
    cl14654
    Location:46 → 258
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    cl25732
    Location:227 → 543
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_022765908.1 → XP_022621629.1  NF-kappa-B essential modulator isoform X1

    UniProtKB/TrEMBL
    A0A3B4ULM1
    Conserved Domains (4) summary
    cd09803
    Location:459 → 544
    UBAN; polyubiquitin binding domain of NEMO and related proteins
    pfam11577
    Location:46 → 113
    NEMO; NF-kappa-B essential modulator NEMO
    cl14654
    Location:46 → 258
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    cl25732
    Location:227 → 559
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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