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prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) [ Seriola dumerili (greater amberjack) ]

Gene ID: 111230125, updated on 15-Mar-2024

Summary

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Gene symbol
prpf3
Gene description
PRP3 pre-mRNA processing factor 3 homolog (yeast)
See related
Ensembl:ENSSDUG00000006840
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174513.1 (711237..719013)

NW_019174513.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase XIV Neighboring gene circadian-associated transcriptional repressor-like Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene ADAMTS-like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174513 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp3
Names
pre-mRNA processing factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174513.1 Reference Sdu_1.0 Primary Assembly

    Range
    711237..719013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022756719.1 → XP_022612440.1  U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4TV07
    Conserved Domains (3) summary
    pfam01480
    Location:9 → 75
    PWI; PWI domain
    pfam06544
    Location:577 → 697
    DUF1115; Protein of unknown function (DUF1115)
    pfam08572
    Location:340 → 552
    PRP3; pre-mRNA processing factor 3 (PRP3)

  2. XM_022756718.1 → XP_022612439.1  U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4TV07
    Conserved Domains (3) summary
    pfam01480
    Location:9 → 75
    PWI; PWI domain
    pfam06544
    Location:577 → 697
    DUF1115; Protein of unknown function (DUF1115)
    pfam08572
    Location:340 → 552
    PRP3; pre-mRNA processing factor 3 (PRP3)

  3. XM_022756721.1 → XP_022612442.1  U4/U6 small nuclear ribonucleoprotein Prp3 isoform X2

    UniProtKB/TrEMBL
    A0A3B4TV07
    Conserved Domains (3) summary
    pfam01480
    Location:9 → 75
    PWI; PWI domain
    pfam06544
    Location:569 → 689
    DUF1115; Protein of unknown function (DUF1115)
    pfam08572
    Location:332 → 544
    PRP3; pre-mRNA processing factor 3 (PRP3)

  4. XM_022756720.1 → XP_022612441.1  U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4TV07
    Related
    ENSSDUP00000009700.1, ENSSDUT00000009888.1
    Conserved Domains (3) summary
    pfam01480
    Location:9 → 75
    PWI; PWI domain
    pfam06544
    Location:577 → 697
    DUF1115; Protein of unknown function (DUF1115)
    pfam08572
    Location:340 → 552
    PRP3; pre-mRNA processing factor 3 (PRP3)
Nucleotide Protein
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