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LOC111220449 ATP-dependent RNA helicase DHX8 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111220449, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111220449
Gene description
ATP-dependent RNA helicase DHX8
See related
Ensembl:ENSSDUG00000010774
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174323.1 (3166763..3177009)

NW_019174323.1Genomic Context describing neighboring genes Neighboring gene ORMDL sphingolipid biosynthesis regulator 3 Neighboring gene thyroid hormone receptor alpha-B Neighboring gene ATP-dependent RNA helicase DHX8-like Neighboring gene ETS variant transcription factor 4 Neighboring gene mesenchyme homeobox 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174323 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DHX8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174323.1 Reference Sdu_1.0 Primary Assembly

    Range
    3166763..3177009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022743543.1 → XP_022599264.1  ATP-dependent RNA helicase DHX8

    UniProtKB/TrEMBL
    A0A3B4U846, A0A3B4U8T3
    Related
    ENSSDUP00000014757.1, ENSSDUT00000015039.1
    Conserved Domains (3) summary
    COG1643
    Location:554 → 1221
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd05684
    Location:266 → 344
    S1_DHX8_helicase; The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing ...
    cl28253
    Location:265 → 424
    RpsA; Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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