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LOC110643522 uncharacterized LOC110643522 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110643522, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110643522
Gene description
uncharacterized LOC110643522
Locus tag
P3X46_030006
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 16 NC_079508.1 (68908002..68912735)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018746810.1 (249504..254272, complement)

Chromosome 16 - NC_079508.1Genomic Context describing neighboring genes Neighboring gene elicitor-responsive protein 3-like Neighboring gene uncharacterized LOC110643510 Neighboring gene F-box/LRR-repeat protein At3g48880-like Neighboring gene probable DEAD-box ATP-dependent RNA helicase 48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC110643522

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079508.1 Reference ASM3005281v1 Primary Assembly

    Range
    68908002..68912735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021795919.2 → XP_021651611.1  uncharacterized protein LOC110643522

    UniProtKB/TrEMBL
    A0A6A6L8K6, A0A6A6MLN0
    Conserved Domains (2) summary
    pfam18121
    Location:140 → 197
    TFA2_Winged_2; TFA2 Winged helix domain 2
    cl02153
    Location:2 → 282
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

  2. XM_021795918.2 → XP_021651610.1  uncharacterized protein LOC110643522

    UniProtKB/TrEMBL
    A0A6A6L8K6, A0A6A6MLN0
    Conserved Domains (2) summary
    pfam18121
    Location:140 → 197
    TFA2_Winged_2; TFA2 Winged helix domain 2
    cl02153
    Location:2 → 282
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
Nucleotide Protein
Heading Accession and Version

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