U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110622253 beta-xylosidase/alpha-L-arabinofuranosidase 2 [ Manihot esculenta (cassava) ]

Gene ID: 110622253, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110622253
Gene description
beta-xylosidase/alpha-L-arabinofuranosidase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110622253 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 9 NC_035169.2 (14253374..14255183, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG9 NC_035169.1 (9398357..9399746, complement)

Chromosome 9 - NC_035169.2Genomic Context describing neighboring genes Neighboring gene protein PELOTA 1-like Neighboring gene uncharacterized LOC110629814 Neighboring gene uncharacterized LOC110607567 Neighboring gene uncharacterized LOC122724509 Neighboring gene uncharacterized LOC110623217

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arabinan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-xylosidase/alpha-L-arabinofuranosidase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035169.2 Reference M.esculenta_v8 Primary Assembly

    Range
    14253374..14255183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043959666.1 → XP_043815601.1  beta-xylosidase/alpha-L-arabinofuranosidase 2

    UniProtKB/TrEMBL
    A0A199U9D1, A0A2C9V8R0
    Conserved Domains (1) summary
    PLN03080
    Location:1 → 90
    PLN03080; Probable beta-xylosidase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases