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LOC110611724 E3 ubiquitin-protein ligase SINAT2 [ Manihot esculenta (cassava) ]

Gene ID: 110611724, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110611724
Gene description
E3 ubiquitin-protein ligase SINAT2
Locus tag
MANES_03G089500v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 3 NC_035163.2 (19623437..19627609, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG3 NC_035163.1 (15164150..15168332, complement)

Chromosome 3 - NC_035163.2Genomic Context describing neighboring genes Neighboring gene protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic Neighboring gene GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic Neighboring gene DPH4 homolog Neighboring gene probable carboxylesterase 11 Neighboring gene uncharacterized LOC110611549

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SINAT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035163.2 Reference M.esculenta_v8 Primary Assembly

    Range
    19623437..19627609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043954801.1 → XP_043810736.1  E3 ubiquitin-protein ligase SINAT2 isoform X2

    UniProtKB/TrEMBL
    A0A251L8I7
    Conserved Domains (2) summary
    pfam03145
    Location:90 → 289
    Sina; Seven in absentia protein family
    cl17238
    Location:58 → 87
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_021752136.2 → XP_021607828.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  3. XM_021752132.2 → XP_021607824.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  4. XM_021752129.2 → XP_021607821.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  5. XM_021752138.2 → XP_021607830.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  6. XM_021752133.2 → XP_021607825.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  7. XM_043954800.1 → XP_043810735.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family

  8. XM_021752131.2 → XP_021607823.1  E3 ubiquitin-protein ligase SINAT2 isoform X1

    UniProtKB/TrEMBL
    A0A251L8G4
    Conserved Domains (2) summary
    cd16571
    Location:58 → 96
    RING-HC_SIAHs; RING finger, HC subclass, found in Drosophila melanogaster protein Seven-in-Absentia (sina) and its homologs
    pfam03145
    Location:102 → 301
    Sina; Seven in absentia protein family
Nucleotide Protein
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