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LOC110542965 HLA class II histocompatibility antigen, DO beta chain [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110542965, updated on 15-Mar-2024

Summary

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Gene symbol
LOC110542965
Gene description
HLA class II histocompatibility antigen, DO beta chain
See related
EnsemblRapid:ENSMUGG00015021050
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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See LOC110542965 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 16 NC_083363.1 (2688766..2693127, complement)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018657794.1 (143868..147928, complement)

Chromosome 16 - NC_083363.1Genomic Context describing neighboring genes Neighboring gene H-2 class II histocompatibility antigen, A-F alpha chain Neighboring gene rano class II histocompatibility antigen, B-1 beta chain-like Neighboring gene uncharacterized LOC132648298 Neighboring gene transporter 2, ATP binding cassette subfamily B member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HLA class II histocompatibility antigen, DO beta chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083363.1 Reference Bangor_MerUng_6.1

    Range
    2688766..2693127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060369088.1 → XP_060225071.1  HLA class II histocompatibility antigen, DO beta chain isoform X1

  2. XM_060369089.1 → XP_060225072.1  HLA class II histocompatibility antigen, DO beta chain isoform X3

  3. XM_021629438.2 → XP_021485113.1  HLA class II histocompatibility antigen, DO beta chain isoform X2

    Related
    ENSMUGP00015029638.1, ENSMUGT00015038339.1
    Conserved Domains (2) summary
    pfam00969
    Location:39 → 113
    MHC_II_beta; Class II histocompatibility antigen, beta domain
    cl11960
    Location:123 → 216
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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