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zgc:162780 class I SAM-dependent methyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110501859, updated on 15-Mar-2024

Summary

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Gene symbol
zgc:162780
Gene description
class I SAM-dependent methyltransferase
See related
Ensembl:ENSOMYG00000022420
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 22
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 22 NC_048586.1 (39451592..39455125)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 22 NC_035098.1 (38444501..38449169)

Chromosome 22 - NC_048586.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110502146 Neighboring gene extensin-like Neighboring gene NEDD8-conjugating enzyme UBE2F Neighboring gene receptor activity modifying protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative methyltransferase DDB_G0268948

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048586.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    39451592..39455125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021579707.2 → XP_021435382.1  putative methyltransferase DDB_G0268948

    UniProtKB/TrEMBL
    A0A060XQZ0
    Related
    ENSOMYP00000049314.1, ENSOMYT00000053611.2
    Conserved Domains (2) summary
    pfam08241
    Location:47 → 139
    Methyltransf_11; Methyltransferase domain
    cl28102
    Location:24 → 219
    CMAS; Mycolic acid cyclopropane synthetase
Nucleotide Protein
Heading Accession and Version

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