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LOC110453453 TNF receptor-associated factor 3-like [ Mizuhopecten yessoensis (Yesso scallop) ]

Gene ID: 110453453, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110453453
Gene description
TNF receptor-associated factor 3-like
Locus tag
KP79_PYT01244
See related
EnsemblRapid:LOC110453453
Gene type
protein coding
RefSeq status
MODEL
Organism
Mizuhopecten yessoensis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten
Also known as
TRAF; TRAF3
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM211388v2 (GCF_002113885.1) Unplaced Scaffold NW_018406987.1 (236917..251747, complement)

NW_018406987.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110453460 Neighboring gene uncharacterized LOC110453454 Neighboring gene uncharacterized LOC110453455 Neighboring gene uncharacterized LOC110453457 Neighboring gene galaxin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018406987 Unplaced Scaffold Reference ASM211388v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and characterization of TRAF genes in the Yesso scallop (Patinopecten yessoensis) and their distinct expression patterns in response to bacterial challenge. Wang J, et al. Fish Shellfish Immunol, 2015 Nov. PMID 26434715

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 3-like
Names
TNF receptor-associated factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mizuhopecten yessoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211388v2 Primary Assembly

Genomic

  1. NW_018406987.1 Reference ASM211388v2 Primary Assembly

    Range
    236917..251747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021502399.1 → XP_021358074.1  TNF receptor-associated factor 3-like

    UniProtKB/TrEMBL
    A0A0P0CDQ6, A0A210QHG7
    Related
    XP_021358074.1, XM_021502399.1
    Conserved Domains (5) summary
    pfam02176
    Location:179 → 223
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:370 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:30 → 64
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl25732
    Location:219 → 356
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28410
    Location:21 → 185
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

  2. XM_021502401.1 → XP_021358076.1  TNF receptor-associated factor 3-like

    UniProtKB/TrEMBL
    A0A0P0CDQ6, A0A210QHG7
    Related
    XP_021358076.1, XM_021502401.1
    Conserved Domains (5) summary
    pfam02176
    Location:179 → 223
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:370 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:30 → 64
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl25732
    Location:219 → 356
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28410
    Location:21 → 185
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

  3. XM_021502400.1 → XP_021358075.1  TNF receptor-associated factor 3-like

    UniProtKB/TrEMBL
    A0A0P0CDQ6, A0A210QHG7
    Related
    XP_021358075.1, XM_021502400.1
    Conserved Domains (5) summary
    pfam02176
    Location:179 → 223
    zf-TRAF; TRAF-type zinc finger
    cl02446
    Location:370 → 553
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:30 → 64
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl25732
    Location:219 → 356
    SMC_N; RecF/RecN/SMC N terminal domain
    cl28410
    Location:21 → 185
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Nucleotide Protein
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