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LOC110246041 DNA-directed RNA polymerase II subunit RPB1 [ Exaiptasia diaphana ]

Gene ID: 110246041, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110246041
Gene description
DNA-directed RNA polymerase II subunit RPB1
Locus tag
AC249_AIPGENE22444
See related
EnsemblRapid:LOC110246041
Gene type
protein coding
RefSeq status
MODEL
Organism
Exaiptasia diaphana
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
Also known as
RpII215
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018387216.1 (146420..156764)

NW_018387216.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110246107 Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 18 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018387216 Unplaced Scaffold Reference Aiptasia genome 1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aiptasia genome 1.1

Genomic

  1. NW_018387216.1 Reference Aiptasia genome 1.1

    Range
    146420..156764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021052339.2 → XP_020907998.1  DNA-directed RNA polymerase II subunit RPB1

    UniProtKB/TrEMBL
    A0A913XQB6
    Related
    XP_020907998.1, XM_021052339.2
    Conserved Domains (4) summary
    cd02584
    Location:1054 → 1471
    RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
    smart01104
    Location:1482 → 1560
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    cd02733
    Location:15 → 872
    RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
    pfam04992
    Location:892 → 1073
    RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
Nucleotide Protein
Heading Accession and Version

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