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GAR1 GAR1 ribonucleoprotein [ Phascolarctos cinereus (koala) ]

Gene ID: 110218595, updated on 15-Mar-2024

Summary

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Gene symbol
GAR1
Gene description
GAR1 ribonucleoprotein
See related
Ensembl:ENSPCIG00000018912
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344042.1 (7703097..7710429, complement)

NW_018344042.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 3 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog Neighboring gene uncharacterized LOC110218596 Neighboring gene complement factor I Neighboring gene phospholipase A2 group XIIA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344042 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snoRNA guided rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344042.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    7703097..7710429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021001349.1 → XP_020857008.1  H/ACA ribonucleoprotein complex subunit 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5LGQ2
    Related
    ENSPCIP00000025143.1, ENSPCIT00000030954.2
    Conserved Domains (1) summary
    pfam04410
    Location:74 → 175
    Gar1; Gar1/Naf1 RNA binding region

  2. XM_021001348.1 → XP_020857007.1  H/ACA ribonucleoprotein complex subunit 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5LFZ5
    Conserved Domains (1) summary
    pfam04410
    Location:74 → 175
    Gar1; Gar1/Naf1 RNA binding region
Nucleotide Protein
Heading Accession and Version

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