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LOC110195567 RNA-binding protein 4 [ Phascolarctos cinereus (koala) ]

Gene ID: 110195567, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110195567
Gene description
RNA-binding protein 4
See related
Ensembl:ENSPCIG00000008541 Ensembl:ENSPCIG00000032721
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
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Genomic context

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See LOC110195567 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344131.1 (4634929..4655959)

NW_018344131.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 pseudogene Neighboring gene copper chaperone for superoxide dismutase Neighboring gene RNA binding motif protein 4B Neighboring gene spectrin beta, non-erythrocytic 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344131 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 14; RNA-binding protein 4; RNA-binding protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344131.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    4634929..4655959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020968394.1 → XP_020824053.1  RNA-binding protein 14 isoform X4

    UniProtKB/TrEMBL
    A0A6P5ISM2
    Conserved Domains (1) summary
    cl17169
    Location:1 → 71
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_020968393.1 → XP_020824052.1  RNA-binding protein 14 isoform X3

    UniProtKB/TrEMBL
    A0A6P5IPQ7
    Conserved Domains (2) summary
    cd12609
    Location:79 → 146
    RRM2_CoAA; RNA recognition motif 2 in vertebrate RRM-containing coactivator activator/modulator (CoAA)
    cl17169
    Location:1 → 71
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_020968396.1 → XP_020824055.1  RNA-binding protein 14 isoform X6

    UniProtKB/TrEMBL
    A0A6P5IPM5
    Conserved Domains (2) summary
    cd12609
    Location:79 → 146
    RRM2_CoAA; RNA recognition motif 2 (RRM2) found in vertebrate RRM-containing coactivator activator/modulator (CoAA)
    cl17169
    Location:1 → 71
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_020968391.1 → XP_020824050.1  RNA-binding protein 14 isoform X1

    UniProtKB/TrEMBL
    A0A6P5IPM0
    Related
    ENSPCIP00000010491.1, ENSPCIT00000013150.2
    Conserved Domains (4) summary
    cd12609
    Location:79 → 146
    RRM2_CoAA; RNA recognition motif 2 in vertebrate RRM-containing coactivator activator/modulator (CoAA)
    cl17169
    Location:1 → 71
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25887
    Location:3 → 295
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl26386
    Location:276 → 443
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  5. XM_020968392.1 → XP_020824051.1  RNA-binding protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P5IYN1
    Related
    ENSPCIP00000047102.1, ENSPCIT00000064172.1
    Conserved Domains (4) summary
    smart00343
    Location:161 → 176
    ZnF_C2HC; zinc finger
    cd12606
    Location:2 → 68
    RRM1_RBM4; RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)
    cd12607
    Location:78 → 144
    RRM2_RBM4; RNA recognition motif 2 in vertebrate RNA-binding protein 4 (RBM4)
    cl26705
    Location:145 → 181
    AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

  6. XM_020968397.1 → XP_020824056.1  RNA-binding protein 4B isoform X7

    UniProtKB/TrEMBL
    A0A6P5IYN6
    Conserved Domains (1) summary
    cl17169
    Location:2 → 68
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_020968395.1 → XP_020824054.1  RNA-binding protein 4B isoform X5

    UniProtKB/TrEMBL
    A0A6P5IZP3
    Conserved Domains (2) summary
    cd12606
    Location:2 → 68
    RRM1_RBM4; RNA recognition motif 1 in vertebrate RNA-binding protein 4 (RBM4)
    cl17169
    Location:78 → 140
    RRM_SF; RNA recognition motif (RRM) superfamily

RNA

  1. XR_002320920.1 RNA Sequence

  2. XR_002320921.1 RNA Sequence

Nucleotide Protein
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