U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110103323 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [ Dendrobium catenatum ]

Gene ID: 110103323, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110103323
Gene description
probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Locus tag
MA16_Dca019853
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendrobium catenatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM160598v2 (GCF_001605985.2) Unplaced Scaffold NW_021318728.1 (643788..656701)
100 previous assembly ASM160598v1 (GCF_001605985.1) Unplaced Scaffold NW_018283556.1 (110141..123101, complement)

NW_021318728.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE homolog, chloroplastic Neighboring gene SKP1-like protein 21 Neighboring gene aquaporin PIP1-2-like Neighboring gene sodium-dependent phosphate transport protein 1, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Names
putative pre-mRNA-splicing factor ATP-dependent RNA helicase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Dendrobium catenatum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM160598v2 Primary Assembly

Genomic

  1. NW_021318728.1 Reference ASM160598v2 Primary Assembly

    Range
    643788..656701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020831987.2 → XP_020687646.1  probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5

    UniProtKB/TrEMBL
    A0A2I0X6V1
    Conserved Domains (2) summary
    COG1643
    Location:448 → 1073
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd05684
    Location:160 → 236
    S1_DHX8_helicase; The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing ...

RNA

  1. XR_002303930.2 RNA Sequence

  2. XR_002303929.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases