U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

smndc1 survival motor neuron domain containing 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109981915, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
smndc1
Gene description
survival motor neuron domain containing 1
See related
Ensembl:ENSLBEG00000004598
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114451.1 (2275307..2280590, complement)

NW_018114451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109981897 Neighboring gene adducin 3 Neighboring gene max-interacting protein 1-like Neighboring gene alpha-2A adrenergic receptor-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_018114451 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114451.1 Reference BallGen_V1

    Range
    2275307..2280590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020630905.2 → XP_020486561.1  survival of motor neuron-related-splicing factor 30

    UniProtKB/TrEMBL
    A0A3Q3EFM0
    Related
    ENSLBEP00000005989.1, ENSLBET00000006290.1
    Conserved Domains (1) summary
    pfam06003
    Location:60 → 115
    SMN; Survival motor neuron protein (SMN)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.