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kars1 lysyl-tRNA synthetase 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109975310, updated on 14-Mar-2024

Summary

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Gene symbol
kars1
Gene description
lysyl-tRNA synthetase 1
See related
Ensembl:ENSLBEG00000026537
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Also known as
kars
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114432.1 (1941210..1950943, complement)

NW_018114432.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA MBII-202 Neighboring gene ribosomal protein L13 Neighboring gene glycine cleavage system protein H (aminomethyl carrier), b Neighboring gene nuclear factor of activated T cells 5b Neighboring gene uncharacterized LOC114917305 Neighboring gene polycystic kidney disease protein 1-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018114432 Unplaced Scaffold Reference BallGen_V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lysine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basophil activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in diadenosine tetraphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of macrophage activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aminoacyl-tRNA synthetase multienzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine--tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Labrus bergylta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BallGen_V1

Genomic

  1. NW_018114432.1 Reference BallGen_V1

    Range
    1941210..1950943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020625772.2 → XP_020481428.1  lysine--tRNA ligase isoform X2

    UniProtKB/TrEMBL
    A0A3Q3GXQ2
    Related
    ENSLBEP00000035383.1, ENSLBET00000036883.1
    Conserved Domains (1) summary
    PLN02502
    Location:6 → 566
    PLN02502; lysyl-tRNA synthetase

  2. XM_020625766.2 → XP_020481422.1  lysine--tRNA ligase isoform X1

    UniProtKB/TrEMBL
    A0A3Q3GVN4, A0A3Q3GXQ2
    Related
    ENSLBEP00000035369.1, ENSLBET00000036867.1
    Conserved Domains (1) summary
    PLN02502
    Location:39 → 598
    PLN02502; lysyl-tRNA synthetase
Nucleotide Protein
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