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LOC109792993 fanconi-associated nuclease 1 homolog [ Cajanus cajan (pigeon pea) ]

Gene ID: 109792993, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109792993
Gene description
fanconi-associated nuclease 1 homolog
Locus tag
KK1_046287
Gene type
protein coding
RefSeq status
MODEL
Organism
Cajanus cajan
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus
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Genomic context

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See LOC109792993 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current C.cajan_V1.0 (GCF_000340665.1) Unplaced Scaffold NW_017985734.1 (14106..31364)

NW_017985734.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109792990 Neighboring gene hyoscyamine 6-dioxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017985734 Unplaced Scaffold Reference C.cajan_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Dutta S, et al. BMC Plant Biol, 2011 Jan 20. PMID 21251263, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 5'-flap endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flap-structured DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fanconi-associated nuclease 1 homolog
Names
Coiled-coil domain-containing protein MTMR15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cajanus cajan Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.cajan_V1.0 Primary Assembly

Genomic

  1. NW_017985734.1 Reference C.cajan_V1.0 Primary Assembly

    Range
    14106..31364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020352454.2 → XP_020208043.1  fanconi-associated nuclease 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A151QRI3
    Conserved Domains (2) summary
    pfam08774
    Location:784 → 901
    VRR_NUC; VRR-NUC domain
    pfam08797
    Location:169 → 262
    HIRAN; HIRAN domain

  2. XM_020352455.2 → XP_020208044.1  fanconi-associated nuclease 1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A151QRI3
    Conserved Domains (2) summary
    pfam08774
    Location:763 → 880
    VRR_NUC; VRR-NUC domain
    pfam08797
    Location:169 → 262
    HIRAN; HIRAN domain
Nucleotide Protein
Heading Accession and Version

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