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LOC109785208 rRNA-processing protein UTP23 homolog [ Aegilops tauschii ]

Gene ID: 109785208, updated on 11-Jan-2024

Summary

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Gene symbol
LOC109785208
Gene description
rRNA-processing protein UTP23 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Aegilops tauschii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Genomic context

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See LOC109785208 in Genome Data Viewer
Location:
chromosome: 5D
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Aet v5.0 (GCF_002575655.2) 5D NC_053039.2 (91000732..91004124, complement)
101 previous assembly Aet v4.0 (GCF_002575655.1) 5D NC_053039.1 (91312032..91315524, complement)

Chromosome 5D - NC_053039.2Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 1-like Neighboring gene uncharacterized LOC120963869 Neighboring gene uncharacterized LOC109785207 Neighboring gene uncharacterized LOC109734780 Neighboring gene uncharacterized LOC123493956

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of novel genetic markers from RNA sequencing assembly of diverse Aegilops tauschii accessions. Nishijima R, et al. Mol Genet Genomics, 2016 Aug. PMID 27142109

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA-processing protein UTP23 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aegilops tauschii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aet v5.0 Primary Assembly

Genomic

  1. NC_053039.2 Reference Aet v5.0 Primary Assembly

    Range
    91000732..91004124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020343820.3 → XP_020199409.1  rRNA-processing protein UTP23 homolog

    UniProtKB/TrEMBL
    A0A453JV30, A0A453JVB9, R7WDV2
    Conserved Domains (1) summary
    cd08553
    Location:26 → 150
    PIN_Fcf1-like; VapC-like PIN domain of rRNA-processing proteins, Fcf1 (Utp24, YDR339C), Utp23 (YOR004W), and other eukaryotic homologs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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