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LINC02231 long intergenic non-protein coding RNA 2231 [ Homo sapiens (human) ]

Gene ID: 109729131, updated on 10-Oct-2023

Summary

Official Symbol
LINC02231provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2231provided by HGNC
Primary source
HGNC:HGNC:53100
See related
Ensembl:ENSG00000248995 AllianceGenome:HGNC:53100
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
12q14.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (64920845..64992291, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (64899860..64971280, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (65314625..65386071, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4626 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4627 Neighboring gene TBC1 domain family member 30 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4628 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:65219125-65219632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6601 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252401-65252902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65252903-65253402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6603 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65282633-65283275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65283276-65283917 Neighboring gene ribosomal protein L7 pseudogene 39 Neighboring gene long intergenic non-protein coding RNA 2389 Neighboring gene uncharacterized LOC124903125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:65325441-65325942 Neighboring gene RNA, U6atac small nuclear 42, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6604 Neighboring gene uncharacterized LOC107984522 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:65386408-65386934 Neighboring gene WNT inhibitory factor 1 Neighboring gene RNA, U6 small nuclear 166, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4629 Neighboring gene apolipoprotein O pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146276.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078815
    Related
    ENST00000510459.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    64920845..64992291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    64899860..64971280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)