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Tph1 tryptophan hydroxylase 1 [ Castor canadensis (American beaver) ]

Gene ID: 109679995, updated on 14-Mar-2024

Summary

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Gene symbol
Tph1
Gene description
tryptophan hydroxylase 1
See related
Ensembl:ENSCCNG00000006340
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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See Tph1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869822.1 (54821..73259, complement)

NW_017869822.1Genomic Context describing neighboring genes Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene uncharacterized LOC109680071 Neighboring gene myogenic differentiation 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017869822.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tryptophan 5-monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serotonin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tryptophan 5-hydroxylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869822.1 Reference C.can genome v1.0

    Range
    54821..73259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020155017.1 → XP_020010606.1  tryptophan 5-hydroxylase 1

    UniProtKB/TrEMBL
    A0A8C0W7T7
    Related
    ENSCCNP00000006017.1, ENSCCNT00000007904.1
    Conserved Domains (1) summary
    cl01244
    Location:3 → 439
    arom_aa_hydroxylase; Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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