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Cyb5a cytochrome b5 type A (microsomal) [ Mus musculus (house mouse) ]

Gene ID: 109672, updated on 3-Jun-2018
Official Symbol
Cyb5aprovided by MGI
Official Full Name
cytochrome b5 type A (microsomal)provided by MGI
Primary source
MGI:MGI:1926952
See related
Ensembl:ENSMUSG00000024646 Vega:OTTMUSG00000030922
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cyb5; 0610009N12Rik
Expression
Broad expression in liver adult (RPKM 359.3), liver E18 (RPKM 268.1) and 25 other tissues See more
Orthologs
See Cyb5a in Genome Data Viewer
Location:
18 E4; 18 57.53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (84851342..84879863)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (85020806..85049255)

Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 69, member C Neighboring gene predicted gene, 17266 Neighboring gene predicted gene 16146 Neighboring gene F-box protein 15 Neighboring gene translocase of inner mitochondrial membrane 21 Neighboring gene predicted gene, 32291

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enzyme binding ISO
Inferred from Sequence Orthology
more info
 
heme binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
stearoyl-CoA 9-desaturase activity TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
fatty acid metabolic process IC
Inferred by Curator
more info
PubMed 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
mitochondrion HDA PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348159.1NP_001335088.1  cytochrome b5 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 3' coding region with an early stop codon, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AA051703, AC134545, AK132102, BY284726
    UniProtKB/TrEMBL
    G5E850, Q544Z9
    Conserved Domains (1) summary
    pfam00173
    Location:1385
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
  2. NM_025797.4NP_080073.1  cytochrome b5 isoform 1

    See identical proteins and their annotated locations for NP_080073.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC134545, AK132102, BY284726
    Consensus CDS
    CCDS29385.1
    UniProtKB/Swiss-Prot
    P56395
    UniProtKB/TrEMBL
    Q544Z9
    Related
    ENSMUSP00000124480.1, OTTMUSP00000040293, ENSMUST00000160180.7, OTTMUST00000076513
    Conserved Domains (1) summary
    pfam00173
    Location:1184
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

    Range
    84851342..84879863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317803.1XP_017173292.1  cytochrome b5 isoform X1

    UniProtKB/TrEMBL
    G5E850
    Related
    ENSMUSP00000025549.7, OTTMUSP00000043304, ENSMUST00000025549.13, OTTMUST00000080699
    Conserved Domains (1) summary
    pfam00173
    Location:1385
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
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