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LOC109577039 SLA class II histocompatibility antigen, DQ haplotype D alpha chain [ Bos indicus (zebu cattle) ]

Gene ID: 109577039, updated on 9-Nov-2023

Summary

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Gene symbol
LOC109577039
Gene description
SLA class II histocompatibility antigen, DQ haplotype D alpha chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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See LOC109577039 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 23 NC_032672.1 (26144339..26199240, complement)

Chromosome 23 - NC_032672.1Genomic Context describing neighboring genes Neighboring gene glial cells missing transcription factor 1 Neighboring gene ELOVL fatty acid elongase 5 Neighboring gene SLA class II histocompatibility antigen, DQ haplotype D alpha chain-like Neighboring gene HLA class II histocompatibility antigen, DRB1-14 beta chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032672.1 Chromosome 23 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of genetic diversity at the DQA loci in African cattle: evidence for a BoLA-DQA3 locus. Ballingall KT, et al. Immunogenetics, 1997. PMID 9211751
  2. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene, 2012 Feb 1. PMID 22134011

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC class II protein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of exogenous peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin production involved in immunoglobulin-mediated immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide antigen assembly with MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MHC class II protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLA class II histocompatibility antigen, DQ haplotype D alpha chain
Names
conecting peptide/transmembrane /cytoplasmic domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032672.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    26144339..26199240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019985769.1 → XP_019841328.1  SLA class II histocompatibility antigen, DQ haplotype D alpha chain

    UniProtKB/TrEMBL
    A0A6P5DSD7
    Conserved Domains (2) summary
    cd05767
    Location:2 → 82
    IgC_MHC_II_alpha; Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam16196
    Location:79 → 131
    C1-set_C; C1-set C-terminal domain
Nucleotide Protein
Heading Accession and Version

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