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SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 [ Bos indicus (zebu cattle) ]

Gene ID: 109570359, updated on 14-Mar-2024

Summary

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Gene symbol
SPSB1
Gene description
splA/ryanodine receptor domain and SOCS box containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SPSB1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 16 NC_032665.1 (41191797..41326656, complement)

Chromosome 16 - NC_032665.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109570789 Neighboring gene uncharacterized LOC109570777 Neighboring gene uncharacterized LOC109570805 Neighboring gene uncharacterized LOC109570536 Neighboring gene G protein-coupled receptor 157

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032665.1 Chromosome 16 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 6-phosphogluconolactonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucose-6-phosphate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPRY domain-containing SOCS box protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032665.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    41191797..41326656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019976246.1 → XP_019831805.1  SPRY domain-containing SOCS box protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P5D1Q5
    Conserved Domains (3) summary
    cd12906
    Location:360 → 533
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:538 → 579
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl27363
    Location:34 → 261
    G6PD_C; Glucose-6-phosphate dehydrogenase, C-terminal domain

  2. XM_019976248.1 → XP_019831807.1  SPRY domain-containing SOCS box protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P5D0L9
    Conserved Domains (2) summary
    cd12906
    Location:54 → 227
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:232 → 273
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

  3. XM_019976247.1 → XP_019831806.1  SPRY domain-containing SOCS box protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P5D0L9
    Conserved Domains (2) summary
    cd12906
    Location:54 → 227
    SPRY_SOCS1-2-4; SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4)
    cl02533
    Location:232 → 273
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

  4. XM_019976245.1 → XP_019831804.1  SPRY domain-containing SOCS box protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5D325
    Conserved Domains (2) summary
    TIGR01198
    Location:562 → 797
    pgl; 6-phosphogluconolactonase
    cl27363
    Location:27 → 510
    G6PD_C; Glucose-6-phosphate dehydrogenase, C-terminal domain

  5. XM_019976244.1 → XP_019831803.1  SPRY domain-containing SOCS box protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5D167
    Conserved Domains (2) summary
    TIGR01198
    Location:569 → 804
    pgl; 6-phosphogluconolactonase
    cl27363
    Location:34 → 517
    G6PD_C; Glucose-6-phosphate dehydrogenase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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