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LOC109542805 protein vav [ Dendroctonus ponderosae (mountain pine beetle) ]

Gene ID: 109542805, updated on 30-Nov-2023

Summary

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Gene symbol
LOC109542805
Gene description
protein vav
Locus tag
HUJ05_011993
See related
EnsemblRapid:LOC109542805
Gene type
protein coding
RefSeq status
MODEL
Organism
Dendroctonus ponderosae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Curculionidae; Scolytinae; Dendroctonus
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Dpon_F_20191213v2 (GCF_020466585.1) Unplaced Scaffold NW_026018916.1 (9209268..9223253)
100 previous assembly DendPond_male_1.0 (GCF_000355655.1) Unplaced Scaffold NW_017852302.1 (1297020..1310760, complement)

NW_026018916.1Genomic Context describing neighboring genes Neighboring gene nuclear hormone receptor FTZ-F1 beta Neighboring gene ras-related protein Rab-9A Neighboring gene peroxidase Neighboring gene leucine-rich repeat-containing protein 57 Neighboring gene high affinity copper uptake protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests. Keeling CI, et al. Insect Biochem Mol Biol, 2012 Aug. PMID 22516182

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein vav

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dendroctonus ponderosae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Dpon_F_20191213v2

Genomic

  1. NW_026018916.1 Reference Dpon_F_20191213v2

    Range
    9209268..9223253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019912192.2 → XP_019767751.1  protein vav

    UniProtKB/TrEMBL
    N6TW91
    Related
    XP_019767751.1
    Conserved Domains (6) summary
    cd00174
    Location:719 → 768
    SH3; Src Homology 3 domain superfamily
    cd00160
    Location:207 → 383
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd01223
    Location:402 → 527
    PH_Vav; Vav pleckstrin homology (PH) domain
    pfam00130
    Location:535 → 579
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
    pfam00307
    Location:14 → 131
    CH; Calponin homology (CH) domain
    cl15255
    Location:604 → 715
    SH2; Src homology 2 (SH2) domain

  2. XM_019912193.2 → XP_019767752.1  protein vav

    UniProtKB/TrEMBL
    N6TW91
    Related
    XP_019767752.1
    Conserved Domains (6) summary
    cd00174
    Location:719 → 768
    SH3; Src Homology 3 domain superfamily
    cd00160
    Location:207 → 383
    RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
    cd01223
    Location:402 → 527
    PH_Vav; Vav pleckstrin homology (PH) domain
    pfam00130
    Location:535 → 579
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
    pfam00307
    Location:14 → 131
    CH; Calponin homology (CH) domain
    cl15255
    Location:604 → 715
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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