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SPIN1 spindlin 1 [ Homo sapiens (human) ]

Gene ID: 10927, updated on 6-Jan-2019

Summary

Official Symbol
SPIN1provided by HGNC
Official Full Name
spindlin 1provided by HGNC
Primary source
HGNC:HGNC:11243
See related
Ensembl:ENSG00000106723 MIM:609936
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPIN; TDRD24
Expression
Ubiquitous expression in endometrium (RPKM 40.9), brain (RPKM 36.4) and 25 other tissues See more
Orthologs

Genomic context

See SPIN1 in Genome Data Viewer
Location:
9q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 9 NC_000009.12 (88388382..88478708)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (91002584..91093623)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene mitofusin-1-like Neighboring gene ribosomal protein SA pseudogene 49 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 14 Neighboring gene ribosomal protein L21 pseudogene 85 Neighboring gene uncharacterized LOC105376134

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Hundreds of variants clustered in genomic loci and biological pathways affect human height.
NHGRI GWA Catalog
Many sequence variants affecting diversity of adult human height.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: LAT

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
methylated histone binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
gamete generation IEA
Inferred from Electronic Annotation
more info
 
meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of Wnt signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
rRNA transcription IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
nuclear membrane IDA
Inferred from Direct Assay
more info
 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
spindle IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spindlin-1
Names
ovarian cancer-related protein
spindlin1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006717.3NP_006708.2  spindlin-1

    See identical proteins and their annotated locations for NP_006708.2

    Status: VALIDATED

    Source sequence(s)
    AF087864, AL353748, DB465491
    Consensus CDS
    CCDS43843.1
    UniProtKB/Swiss-Prot
    Q9Y657
    UniProtKB/TrEMBL
    A0A024R297
    Related
    ENSP00000365019.3, ENST00000375859.3
    Conserved Domains (1) summary
    pfam02513
    Location:54102
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p12 Primary Assembly

    Range
    88388382..88478708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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