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LOC109243564 endonuclease MutS2 [ Nicotiana attenuata ]

Gene ID: 109243564, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109243564
Gene description
endonuclease MutS2
Locus tag
A4A49_11927
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana attenuata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
MSH6_3
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
100 current NIATTr2 (GCF_001879085.1) 2 NC_031990.1 (5816173..5820924)

Chromosome 2 - NC_031990.1Genomic Context describing neighboring genes Neighboring gene T-complex protein 1 subunit zeta 1-like Neighboring gene sugar transport protein 10-like Neighboring gene stem-specific protein TSJT1 Neighboring gene anther-specific protein TA-29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_031990.1 Chromosome 2 Reference NIATTr2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution and diversification of the Argonaute family of proteins in plants. Singh RK, et al. BMC Plant Biol, 2015 Jan 28. PMID 25626325, Free PMC Article
  2. Cytokinin levels and signaling respond to wounding and the perception of herbivore elicitors in Nicotiana attenuata. Schäfer M, et al. J Integr Plant Biol, 2015 Feb. PMID 24924599, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC109243564
Names
dna mismatch repair protein msh6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana attenuata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NIATTr2

Genomic

  1. NC_031990.1 Reference NIATTr2

    Range
    5816173..5820924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019410507.1 → XP_019266052.1  uncharacterized protein LOC109243564

    UniProtKB/TrEMBL
    A0A1J6ILB5
Nucleotide Protein
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