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def PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [ Mycobacterium bovis AF2122/97 ]

Gene ID: 1091449, discontinued on 3-Jun-2021
  • This record was discontinued.

Summary

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Gene symbol
def
Gene description
PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE)
Locus tag
BQ2027_MB0437C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mycobacterium bovis AF2122/97 (isolate: AF2122/97)
Lineage
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
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Genomic context

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Location:
chromosome: Mycobacterium_bovis_AF2122/97
Sequence:
Chromosome: Mycobacterium_bovis_AF212297; NC_002945.4 (518822..519415, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002945.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE)
YP_009357766.1
  • Mb0437c, def, len: 197 aa. Equivalent to Rv0429c, len: 197 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 197 aa overlap). Probable def, polypeptide deformylase (EC 3.5.1.31), equivalent to CAC30884.1|AL583923 polypeptide deformylase from Mycobacterium leprae (197 aa). Also similar to others e.g. DEF_ECOLI|P27251|95874|S23107 polypeptide deformylase from Escherichia coli (169 aa), FASTA scores: opt: 179, E(): 1.8e-05, (34.6% identity in 162 aa overlap); etc. BELONGS TO THE POLYPEPTIDE DEFORMYLASE FAMILY. COFACTOR: BINDS 1 ZINC ION. Protein product from Mb0437c detected using shotgun mass spectrometry and SWATH mass spectrometry. Mb0437c found to be expressed during exponential growth in Sauton's minimal media by RNA-sequencing.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002945.4 Reference assembly

    Range
    518822..519415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009357766.1 PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium bovis AF2122/97]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7U206.1

Gene LinkOut

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Molecular Biology Databases