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LOC109091081 SEC61 translocon subunit alpha 1 [ Cyprinus carpio (common carp) ]

Gene ID: 109091081, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109091081
Gene description
SEC61 translocon subunit alpha 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
Also known as
sec61a1
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Genomic context

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Location:
chromosome: A6
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) A6 NC_056577.1 (25517769..25523412, complement)
100 previous assembly common carp genome (GCF_000951615.1) 11 NC_031707.1 (6504828..6508037)

Chromosome A6 - NC_056577.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 4 (proto-oncogene) Neighboring gene ER membrane protein complex subunit 3-like Neighboring gene inositol hexakisphosphate kinase 2-like Neighboring gene macrophage-stimulating protein receptor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-translational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Sec61 translocon complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec61 subunit alpha-like 1
Names
SEC61 translocon alpha 1 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056577.1 Reference ASM1834038v1 Primary Assembly

    Range
    25517769..25523412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042758704.1 → XP_042614638.1  protein transport protein Sec61 subunit alpha-like 1

    UniProtKB/TrEMBL
    A0A8C1GCN8, A0A8C1VRU4, A0A8C2L1G6, A0A9J8AT42
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 471
    PTZ00219; Sec61 alpha subunit; Provisional
Nucleotide Protein
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