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LOC109082419 torsin-1A-like [ Cyprinus carpio (common carp) ]

Gene ID: 109082419, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109082419
Gene description
torsin-1A-like
See related
Ensembl:ENSCCRG00000050504
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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Location:
chromosome: B23
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B23 NC_056619.1 (24056053..24063445)
100 previous assembly common carp genome (GCF_000951615.1) Unplaced Scaffold NW_017542799.1 (23640..30134, complement)

Chromosome B23 - NC_056619.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein SOWAHC Neighboring gene pleckstrin homology domain-containing family G member 5-like Neighboring gene torsin-1A-like Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 16 Neighboring gene agmatinase (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone cofactor-dependent protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056619.1 Reference ASM1834038v1 Primary Assembly

    Range
    24056053..24063445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019097304.2 → XP_018952849.1  torsin-1A-like isoform X2

    UniProtKB/TrEMBL
    A0A8C1V8G6, A0A9J7ZQP3, A0A9Q9V9A8
    Related
    ENSCCRP00000093409.1

  2. XM_019097303.2 → XP_018952848.1  torsin-1A-like isoform X1

    UniProtKB/TrEMBL
    A0A8C1GB77, A0A9Q9V9D2
Nucleotide Protein
Heading Accession and Version

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