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LOC109049814 polyunsaturated fatty acid 5-lipoxygenase-like [ Cyprinus carpio (common carp) ]

Gene ID: 109049814, updated on 7-Dec-2023

Summary

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Gene symbol
LOC109049814
Gene description
polyunsaturated fatty acid 5-lipoxygenase-like
See related
Ensembl:ENSCCRG00000011660
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyprinus carpio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Cyprinus
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Genomic context

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See LOC109049814 in Genome Data Viewer
Location:
chromosome: B13
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM1834038v1 (GCF_018340385.1) B13 NC_056609.1 (11508254..11518853, complement)
100 previous assembly common carp genome (GCF_000951615.1) 48 NC_031744.1 (9582703..9591515)

Chromosome B13 - NC_056609.1Genomic Context describing neighboring genes Neighboring gene AN1-type zinc finger protein 4-like Neighboring gene WASH complex subunit 2C-like Neighboring gene graves disease carrier protein-like Neighboring gene methylcytosine dioxygenase TET3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate 5-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyunsaturated fatty acid 5-lipoxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyprinus carpio Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834038v1 Primary Assembly

Genomic

  1. NC_056609.1 Reference ASM1834038v1 Primary Assembly

    Range
    11508254..11518853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042736516.1 → XP_042592450.1  polyunsaturated fatty acid 5-lipoxygenase-like

    UniProtKB/TrEMBL
    A0A8C1WL30, A0A9R0ABY6
    Conserved Domains (2) summary
    PLN02337
    Location:165 → 674
    PLN02337; lipoxygenase
    cd01753
    Location:2 → 115
    PLAT_LOX; PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and ...
Nucleotide Protein
Heading Accession and Version

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