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LOC109000982 thymidylate kinase-like [ Juglans regia (English walnut) ]

Gene ID: 109000982, updated on 22-Oct-2023

Summary

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Gene symbol
LOC109000982
Gene description
thymidylate kinase-like
Locus tag
F2P56_017420
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 8 NC_049908.1 (493225..497954, complement)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017388951.1 (471995..476670, complement)

Chromosome 8 - NC_049908.1Genomic Context describing neighboring genes Neighboring gene patellin-3 Neighboring gene uncharacterized LOC109000983 Neighboring gene E3 ubiquitin-protein ligase RNF170-like Neighboring gene uncharacterized LOC109000984 Neighboring gene beta-amyrin 28-monooxygenase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UMP/dUMP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thymidylate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dTDP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dTTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dUDP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thymidylate kinase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049908.1 Reference Walnut 2.0 Primary Assembly

    Range
    493225..497954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018978076.2 → XP_018833621.2  thymidylate kinase-like isoform X2

    UniProtKB/TrEMBL
    A0A2I4FPP1, A0A833UZT1
    Conserved Domains (1) summary
    PLN02924
    Location:50 → 261
    PLN02924; thymidylate kinase

  2. XM_035693462.1 → XP_035549355.1  thymidylate kinase-like isoform X1

    UniProtKB/TrEMBL
    A0A6P9ELG0, A0A833UZT1
    Conserved Domains (1) summary
    PLN02924
    Location:75 → 286
    PLN02924; thymidylate kinase
Nucleotide Protein
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