U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC108995055 isoleucine--tRNA ligase, chloroplastic/mitochondrial [ Juglans regia (English walnut) ]

Gene ID: 108995055, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC108995055
Gene description
isoleucine--tRNA ligase, chloroplastic/mitochondrial
Locus tag
F2P56_015488
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 7 NC_049907.1 (34255009..34270585)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017443574.1 (1683776..1699439, complement)

Chromosome 7 - NC_049907.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene translocase of chloroplast 159, chloroplastic-like Neighboring gene probable histone-arginine methyltransferase 1.3 Neighboring gene xyloglucan 6-xylosyltransferase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isoleucine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoleucyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
isoleucine--tRNA ligase, chloroplastic/mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049907.1 Reference Walnut 2.0 Primary Assembly

    Range
    34255009..34270585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018970543.2 → XP_018826088.2  isoleucine--tRNA ligase, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A0A2I4F378
    Conserved Domains (1) summary
    PLN02843
    Location:123 → 1100
    PLN02843; isoleucyl-tRNA synthetase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases