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LOC108987587 2-isopropylmalate synthase 1, chloroplastic-like [ Juglans regia (English walnut) ]

Gene ID: 108987587, updated on 11-Apr-2024

Summary

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Gene symbol
LOC108987587
Gene description
2-isopropylmalate synthase 1, chloroplastic-like
Locus tag
F2P56_015318
Gene type
protein coding
RefSeq status
MODEL
Organism
Juglans regia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Genomic context

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Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Walnut 2.0 (GCF_001411555.2) 7 NC_049907.1 (29470325..29492966)
100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017442945.1 (173224..195919, complement)

Chromosome 7 - NC_049907.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118348919 Neighboring gene probable glycosyltransferase At5g11130 Neighboring gene PTI1-like tyrosine-protein kinase 1 Neighboring gene uncharacterized LOC108987593

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-isopropylmalate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-isopropylmalate synthase 1, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Walnut 2.0 Primary Assembly

Genomic

  1. NC_049907.1 Reference Walnut 2.0 Primary Assembly

    Range
    29470325..29492966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018960516.2 → XP_018816061.1  2-isopropylmalate synthase 1, chloroplastic-like

    UniProtKB/TrEMBL
    A0A2I4E9I4
    Conserved Domains (1) summary
    PLN02321
    Location:4 → 635
    PLN02321; 2-isopropylmalate synthase
Nucleotide Protein
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