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asl argininosuccinate lyase [ Lates calcarifer (barramundi perch) ]

Gene ID: 108893495, updated on 10-Apr-2024

Summary

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Gene symbol
asl
Gene description
argininosuccinate lyase
See related
EnsemblRapid:ENSLCAG00010021164
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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See asl in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
16
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG20 NC_066852.1 (19883351..19888996)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017365383.1 (16489155..16494803)

Linkage Group LG20 - NC_066852.1Genomic Context describing neighboring genes Neighboring gene teleost multiple tissue opsin 3b Neighboring gene tyrosylprotein sulfotransferase 1, like Neighboring gene serine protease FAM111A Neighboring gene calcitonin gene-related peptide-receptor component protein Neighboring gene carbonic anhydrase IV c Neighboring gene aldehyde dehydrogenase 3 family, member A2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables argininosuccinate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine biosynthetic process via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
argininosuccinate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066852.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    19883351..19888996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018691571.2 → XP_018547087.1  argininosuccinate lyase

    UniProtKB/TrEMBL
    A0A4W6F4J1, A0A4W6F6K8
    Related
    ENSLCAP00010045571.2, ENSLCAT00010046682.2
Nucleotide Protein
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Gene LinkOut

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