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LOC108805431 biotin--protein ligase 1, chloroplastic [ Raphanus sativus (radish) ]

Gene ID: 108805431, updated on 9-Nov-2023

Summary

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Gene symbol
LOC108805431
Gene description
biotin--protein ligase 1, chloroplastic
Locus tag
Rs2_03194
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC108805431 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 1 NC_079511.1 (22999402..23003634, complement)
100 previous assembly Rs1.0 (GCF_000801105.1) Unplaced Scaffold NW_017353139.1 (22770981..22774907, complement)

Chromosome 1 - NC_079511.1Genomic Context describing neighboring genes Neighboring gene probable disease resistance protein At1g15890 Neighboring gene alanine--tRNA ligase Neighboring gene uncharacterized LOC108805474 Neighboring gene uncharacterized LOC130496485 Neighboring gene transcription initiation factor TFIID subunit 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079511.1 Reference ASM80110v3 Primary Assembly

    Range
    22999402..23003634 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018577485.2 → XP_018432987.2  biotin--protein ligase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A6J0JBI7

  2. XM_018577488.2 → XP_018432990.2  biotin--protein ligase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A6J0JBI7

  3. XM_018577489.2 → XP_018432991.2  biotin--protein ligase 1, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A6J0JD76

  4. XM_018577487.2 → XP_018432989.2  biotin--protein ligase 1, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A6J0JBI7
Nucleotide Protein
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